<< Chapter < Page Chapter >> Page >

Though the signal’s position is well-defined according to the position of the xy mirrors, the signal from fluorescence is relatively weak after passing through the pinhole, so a photomultiplier tube is used to detect emitted photons. Detecting all photons without regard to spatial position increases the signal, and the photomultiplier tube further increases the detection signal by propagating an electron cascade resulting from the photoelectric effect (incident photons kicking off electrons). The resulting signal is an analog electrical signal with continuously varying voltage that corresponds to the emission intensity. This is periodically sampled by an analog-to-digital converter.

It is important to understand that the image is a reconstruction of many points sampled across the specimen. At any given time the microscope is only looking at a tiny point, and no complete image exists that can be viewed at an instantaneous point in time. Software is used to recombine these points to form an image plane, and combine image planes to form a 3-D representation of the sample volume.

Two-photon microscopy

Two-photon microscopy is a technique whereby two beams of lower intensity are directed to intersect at the focal point. Two photons can excite a fluorophore if they hit it at the same time, but alone they do not have enough energy to excite any molecules. The probability of two photons hitting a fluorophore at nearly the exact same time (less than 10 -16 ) is very low, but more likely at the focal point. This creates a bright point of light in the sample without the usual cone of light above and below the focal plane, since there are almost no excitations away from the focal point.

Schematic representation of the difference between single photon and two photon microscopy. Copyright: J. Mertz, Boston University.

To increase the chance of absorption, an ultra-fast pulsed laser is used to create quick, intense light pulses. Since the hourglass shape is replaced by a point source, the pinhole near the detector (used to reduce the signal from light originating from outside the focal plane) can be eliminated. This also increases the signal-to-noise ratio (here is very little noise now that the light source is so focused, but the signal is also small). These lasers have lower average incident power than normal lasers, which helps reduce damage to the surrounding specimen. This technique can image deeper into the specimen (~400 μm), but these lasers are still very expensive, difficult to set up, require a stronger power supply, intensive cooling, and must be aligned in the same optical table because pulses can be distorted in optical fibers.

Microparticle characterization

Confocal microscopy is very useful for determining the relative positions of particles in three dimensions [link] . Software allows measurement of distances in the 3D reconstructions so that information about spacing can be ascertained (such as packing density, porosity, long range order or alignment, etc.).

A reconstruction of a colloidal suspension of poly(methyl methacrylate) (PMMA) microparticles approximately 2 microns in diameter. Adapted from Confocal Microscopy of Colloids , Eric Weeks.

If imaging in fluorescence mode, remember that the signal will only represent the locations of the individual fluorophores. There is no guarantee fluorophores will completely attach to the structures of interest or that there will not be stray fluorophores away from those structures. For microparticles it is often possible to attach the fluorophores to the shell of the particle, creating hollow spheres of fluorophores. It is possible to tell if a sample sphere is hollow or solid but it would depend on the transparency of the material.

Dispersions of microparticles have been used to study nucleation and crystal growth, since colloids are much larger than atoms and can be imaged in real-time. Crystalline regions are determined from the order of spheres arranged in a lattice, and regions can be distinguished from one another by noting lattice defects.

Self-assembly is another application where time-dependent, 3-D studies can help elucidate the assembly process and determine the position of various structures or materials. Because confocal is popular for biological specimens, the position of nanoparticles such as quantum dots in a cell or tissue can be observed. This can be useful for determining toxicity, drug-delivery effectiveness, diffusion limitations, etc.

A summary of confocal microscopy’s strengths and weaknesses

    Strengths

  • Less haze, better contrast than ordinary microscopes.
  • 3-D capability.
  • Illuminates a small volume.
  • Excludes most of the light from the sample not in the focal plane.
  • Depth of field may be adjusted with pinhole size.
  • Has both reflected light and fluorescence modes.
  • Can image living cells and tissues.
  • Fluorescence microscopy can identify several different structures simultaneously.
  • Accommodates samples with thickness up to 100 μm.
  • Can use with two-photon microscopy.
  • Allows for optical sectioning (no artifacts from physical sectioning) 0.5 - 1.5 μm.

    Weakness

  • Images are scanned slowly (one complete image every 0.1-1 second).
  • Must raster scan sample, no complete image exists at any given time.
  • There is an inherent resolution limit because of diffraction (based on numerical aperture, ~200 nm).
  • Sample should be relatively transparent for good signal.
  • High fluorescence concentrations can quench the fluorescent signal.
  • Fluorophores irreversibly photobleach.
  • Lasers are expensive.
  • Angle of incident light changes slightly, introducing slight distortion.

Bibliography

  • P. Davidovits and M. D. Egger, Nature , 1973, 244 , 366.
  • A. Hibbs, Confocal Microscopy for Biologists , Twayne Publishers, Boston (2004).
  • M. Minsky, Scanning , 1988, 10 , 128.
  • J. Pawley, Handbook of Biological Confocal Microscopy , Twayne Publishers, Boston (2006).
  • V. Prasad, D. Semwogerere, and E.R. Weeks, J. Phys.: Condens. Matter , 2007, 19 , 113102.
  • D. Semwogerere and E. R. Weeks, Encyclopedia of Biomaterials and Biomedical Engineering Confocal Microscopy , Taylor Francis (2005).
  • C. Sheppard, Confocal Laser Scanning Microscopy , Twayne Publishers, Boston (1997).

Questions & Answers

how does Neisseria cause meningitis
Nyibol Reply
what is microbiologist
Muhammad Reply
what is errata
Muhammad
is the branch of biology that deals with the study of microorganisms.
Ntefuni Reply
What is microbiology
Mercy Reply
studies of microbes
Louisiaste
when we takee the specimen which lumbar,spin,
Ziyad Reply
How bacteria create energy to survive?
Muhamad Reply
Bacteria doesn't produce energy they are dependent upon their substrate in case of lack of nutrients they are able to make spores which helps them to sustain in harsh environments
_Adnan
But not all bacteria make spores, l mean Eukaryotic cells have Mitochondria which acts as powerhouse for them, since bacteria don't have it, what is the substitution for it?
Muhamad
they make spores
Louisiaste
what is sporadic nd endemic, epidemic
Aminu Reply
the significance of food webs for disease transmission
Abreham
food webs brings about an infection as an individual depends on number of diseased foods or carriers dully.
Mark
explain assimilatory nitrate reduction
Esinniobiwa Reply
Assimilatory nitrate reduction is a process that occurs in some microorganisms, such as bacteria and archaea, in which nitrate (NO3-) is reduced to nitrite (NO2-), and then further reduced to ammonia (NH3).
Elkana
This process is called assimilatory nitrate reduction because the nitrogen that is produced is incorporated in the cells of microorganisms where it can be used in the synthesis of amino acids and other nitrogen products
Elkana
Examples of thermophilic organisms
Shu Reply
Give Examples of thermophilic organisms
Shu
advantages of normal Flora to the host
Micheal Reply
Prevent foreign microbes to the host
Abubakar
they provide healthier benefits to their hosts
ayesha
They are friends to host only when Host immune system is strong and become enemies when the host immune system is weakened . very bad relationship!
Mark
what is cell
faisal Reply
cell is the smallest unit of life
Fauziya
cell is the smallest unit of life
Akanni
ok
Innocent
cell is the structural and functional unit of life
Hasan
is the fundamental units of Life
Musa
what are emergency diseases
Micheal Reply
There are nothing like emergency disease but there are some common medical emergency which can occur simultaneously like Bleeding,heart attack,Breathing difficulties,severe pain heart stock.Hope you will get my point .Have a nice day ❣️
_Adnan
define infection ,prevention and control
Innocent
I think infection prevention and control is the avoidance of all things we do that gives out break of infections and promotion of health practices that promote life
Lubega
Heyy Lubega hussein where are u from?
_Adnan
en français
Adama
which site have a normal flora
ESTHER Reply
Many sites of the body have it Skin Nasal cavity Oral cavity Gastro intestinal tract
Safaa
skin
Asiina
skin,Oral,Nasal,GIt
Sadik
How can Commensal can Bacteria change into pathogen?
Sadik
How can Commensal Bacteria change into pathogen?
Sadik
all
Tesfaye
by fussion
Asiina
what are the advantages of normal Flora to the host
Micheal
what are the ways of control and prevention of nosocomial infection in the hospital
Micheal
what is inflammation
Shelly Reply
part of a tissue or an organ being wounded or bruised.
Wilfred
what term is used to name and classify microorganisms?
Micheal Reply
Binomial nomenclature
adeolu
Got questions? Join the online conversation and get instant answers!
Jobilize.com Reply

Get Jobilize Job Search Mobile App in your pocket Now!

Get it on Google Play Download on the App Store Now




Source:  OpenStax, Physical methods in chemistry and nano science. OpenStax CNX. May 05, 2015 Download for free at http://legacy.cnx.org/content/col10699/1.21
Google Play and the Google Play logo are trademarks of Google Inc.

Notification Switch

Would you like to follow the 'Physical methods in chemistry and nano science' conversation and receive update notifications?

Ask